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ornladios / ADIOS

The old ADIOS 1.x code repository. Look for ADIOS2 for new repo
https://csmd.ornl.gov/adios
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Compilation error #211

Open rkube opened 4 years ago

rkube commented 4 years ago

Hi, I'm trying to compile ADIOS1 using gcc8. I'm getting the following error: [ 11%] Building C object src/CMakeFiles/adios.dir/write/adios_mpi_amr.c.o [ 11%] Building C object src/CMakeFiles/adios.dir/write/adios_posix.c.o /home/rkube/repos/ADIOS/src/write/adios_posix.c: In function ‘adios_posix_write_pg’: /home/rkube/repos/ADIOS/src/write/adios_posix.c:739:32: error: ‘struct adios_POSIX_data_struct’ has no member named ‘rank’ fd->name, p->rank, strerror(errno)); ^~ /home/rkube/repos/ADIOS/src/write/adios_posix.c:746:32: error: ‘struct adios_POSIX_data_struct’ has no member named ‘rank’ fd->name, p->rank, to_write, wrote); ^~ make[2]: [src/CMakeFiles/adios.dir/build.make:1090: src/CMakeFiles/adios.dir/write/adios_posix.c.o] Error 1 make[1]: [CMakeFiles/Makefile2:160: src/CMakeFiles/adios.dir/all] Error 2 make: *** [Makefile:130: all] Error 2

pnorbert commented 4 years ago

Did you configure with mpicc or gcc?

pnorbert commented 4 years ago

My setup on Rhea is:

export BUILD_WRITE=ON
export BUILD_FORTRAN=ON
export adios_timers=ON
export INSTALL_PREFIX="$PWD/install"
export CC=mpicc
export CXX=mpiCC
export FC=mpif90
export EXTRA_CFLAGS=""
export CFLAGS="-g -fPIC ${EXTRA_CFLAGS}"
/ccs/proj/e2e/pnorbert/ADIOS/ADIOS/build.rhea.gcc $ cmake ..
-- The C compiler identification is GNU 8.4.0
-- The CXX compiler identification is GNU 8.4.0
-- Check for working C compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpicc
-- Check for working C compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpicc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpiCC
-- Check for working CXX compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpiCC -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PythonInterp: /usr/bin/python (found version "2.7.5") 
-- Python 2.7.5 will be used in building ADIOS
-- MACRODEFFLAG = -D
research_transports is NOT enabled
-- Looking for include file Attributes.h
-- Looking for include file Attributes.h - not found
-- Looking for nanosleep
-- Looking for nanosleep - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for clock_gettime
-- Looking for clock_gettime - found
-- Looking for clock_get_time
-- Looking for clock_get_time - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clockid_t
-- Check size of clockid_t - done
-- Looking for include file infiniband/verbs.h
-- Looking for include file infiniband/verbs.h - found
-- Looking for ibv_alloc_pd
-- Looking for ibv_alloc_pd - not found
-- Looking for PtlInit
-- Looking for PtlInit - not found
-- Looking for include file portals3.h
-- Looking for include file portals3.h - not found
-- Looking for include file portals/portals3.h
-- Looking for include file portals/portals3.h - not found
-- Looking for include file p3nal_utcp.h
-- Looking for include file p3nal_utcp.h - not found
-- Looking for include file p3rt/p3rt.h
-- Looking for include file p3rt/p3rt.h - not found
-- Looking for include file dlfcn.h
-- Looking for include file dlfcn.h - found
-- Looking for include file dmalloc.h
-- Looking for include file dmalloc.h - not found
-- Looking for fdatasync
-- Looking for fdatasync - found
-- Found MPI_C: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/lib/libmpi.so  
-- Found MPI_CXX: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/lib/libmpi_cxx.so;/autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/lib/libmpi.so  
-- find MPI
-- Looking for include file inttypes.h
-- Looking for include file inttypes.h - found
-- Looking for include file memory.h
-- Looking for include file memory.h - found
-- MXML will be built for ADIOS in ./src/mxml
-- Checking type long long int
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE  
-- Looking for pthread_yield
-- Looking for pthread_yield - found
-- Looking for PtlACEntry
-- Looking for PtlACEntry - not found
-- Looking for PtlErrorStr
-- Looking for PtlErrorStr - not found
-- Looking for PtlEventKindStr
-- Looking for PtlEventKindStr - not found
-- Looking for PtlGetJid
-- Looking for PtlGetJid - not found
-- Looking for PtlNIFailStr
-- Looking for PtlNIFailStr - not found
-- Looking for sched_yield
-- Looking for sched_yield - found
-- Looking for include file stdlib.h
-- Looking for include file stdlib.h - found
-- Looking for strerror
-- Looking for strerror - found
-- Looking for include file strings.h
-- Looking for include file strings.h - found
-- Looking for include file string.h
-- Looking for include file string.h - found
-- Looking for strncpy
-- Looking for strncpy - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for strndup
-- Looking for strndup - found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for vsnprintf
-- Looking for vsnprintf - found
-- Looking for include file sys/stat.h
-- Looking for include file sys/stat.h - found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") 
-- ZFP will be built for ADIOS in ./src/zfp
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpif90
-- Check for working Fortran compiler: /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpif90  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpif90 supports Fortran 90
-- Checking whether /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpif90 supports Fortran 90 -- yes
-- CMAKE_Fortran_COMPILER_WORKS =TRUE
-- Detecting Fortran/C Interface
-- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling
-- C;CXX;Fortran
*********************************
adios configured as follows:
*********************************

  - Build both the Write and Read libraries
  - Build both the C and Fortran libraries

  - General Compile FLAGS
      - CC  = /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpicc
      - CXX = /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpiCC
      - FC  = /autofs/nccs-svm1_sw/rhea/.swci/0-core/opt/spack/20191017/linux-rhel7-x86_64/gcc-8.4.0/openmpi-3.1.4-bmn7or3eq2xi2sol4f7yvlpnwniut7yd/bin/mpif90
      - CPPFLAGS = 
      - CFLAGS   = -g -fPIC 
      - CXXFLAGS = 
      - FCFLAGS  = 
      - LIBS     = 
      - MPILIBS  = 

  - ADIOS Timers Enabled
  - ADIOS Timer Events Disabled
  - MXML -- Build with ADIOS
  - No LUSTRE
  - No FGR
  - No GLIB
  - Networking library for staging methods:
  - No DATASPACES to build DATASPACES transport method
  - No DIMES to build DIMES transport method
  - No PHDF5 to build PHDF5 transport method
  - No HDF5
  - No NETCDF 4 Parallel to build NC4 transport method
  - No NetCDF
  - No FLEXPATH to build FLEXPATH transport method
  - No ICEE to build ICEE transport method
  - ZLIB
      - ZLIB_CFLAGS = 
      - ZLIB_CPPFLAGS = -I/usr/include
      - ZLIB_LIBS = /usr/lib64/libz.so

  - No LZ4 to build LZ4 transform method
  - No BLOSC to build BLOSC transform method
  - No BZIP2 to build BZIP2 transform method
  - No SZIP to build SZIP transform method
  - No ISOBAR to build ISOBAR transform method
  - No APLOD to build APLOD transform method
  - No FASTBIT to build FASTBIT query method
  - No ALACRITY to build ALACRITY transform & query method
  - ZFP is built with ADIOS
  - No SZ to build SZ transform method
  - No MGARD to build MGARD transform method
  - No Z-Checker to build ZCHECKER transform method
  - BGQ METHOD is disabled

  - Install path = /ccs/proj/e2e/pnorbert/ADIOS/ADIOS/build.rhea.gcc/install

-- Configuring done
-- Generating done
-- Build files have been written to: /ccs/proj/e2e/pnorbert/ADIOS/ADIOS/build.rhea.gcc
rkube commented 4 years ago

Oh, I've just used the plain CC=gcc/CXX=g++ . I've changed the compilers but still get the errors I'm on traverse.princeton.edu (power9). Here is the output from cmake

Configuring on traverse -- The C compiler identification is GNU 8.3.1 -- The CXX compiler identification is GNU 8.3.1 -- Check for working C compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpicc -- Check for working C compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpic++ -- Check for working CXX compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpic++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /home/rkube/local/anaconda3/bin/python (found version "3.7.3") -- Python 3.7.3 will be used in building ADIOS -- MACRODEFFLAG = -D research_transports is NOT enabled -- Looking for include file Attributes.h -- Looking for include file Attributes.h - not found -- Looking for nanosleep -- Looking for nanosleep - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for clock_gettime -- Looking for clock_gettime - found -- Looking for clock_get_time -- Looking for clock_get_time - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clockid_t -- Check size of clockid_t - done -- Looking for include file infiniband/verbs.h -- Looking for include file infiniband/verbs.h - found -- Looking for ibv_alloc_pd -- Looking for ibv_alloc_pd - not found -- Looking for PtlInit -- Looking for PtlInit - not found -- Looking for include file portals3.h -- Looking for include file portals3.h - not found -- Looking for include file portals/portals3.h -- Looking for include file portals/portals3.h - not found -- Looking for include file p3nal_utcp.h -- Looking for include file p3nal_utcp.h - not found -- Looking for include file p3rt/p3rt.h -- Looking for include file p3rt/p3rt.h - not found -- Looking for include file dlfcn.h -- Looking for include file dlfcn.h - found -- Looking for include file dmalloc.h -- Looking for include file dmalloc.h - not found -- Looking for fdatasync -- Looking for fdatasync - found -- Could NOT find MPI (missing: MPI_Fortran_FOUND Fortran) -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file memory.h -- Looking for include file memory.h - found -- MXML will be built for ADIOS in ./src/mxml -- Checking type long long int -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE
-- Looking for pthread_yield -- Looking for pthread_yield - found -- Looking for PtlACEntry -- Looking for PtlACEntry - not found -- Looking for PtlErrorStr -- Looking for PtlErrorStr - not found -- Looking for PtlEventKindStr -- Looking for PtlEventKindStr - not found -- Looking for PtlGetJid -- Looking for PtlGetJid - not found -- Looking for PtlNIFailStr -- Looking for PtlNIFailStr - not found -- Looking for sched_yield -- Looking for sched_yield - found -- Looking for include file stdlib.h -- Looking for include file stdlib.h - found -- Looking for strerror -- Looking for strerror - found -- Looking for include file strings.h -- Looking for include file strings.h - found -- Looking for include file string.h -- Looking for include file string.h - found -- Looking for strncpy -- Looking for strncpy - found -- Looking for strdup -- Looking for strdup - found -- Looking for strndup -- Looking for strndup - found -- Looking for snprintf -- Looking for snprintf - found -- Looking for vsnprintf -- Looking for vsnprintf - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- ZFP will be used from /home/rkube/repos/zfp/build -- The Fortran compiler identification is GNU 8.3.1 -- Check for working Fortran compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpifort -- Check for working Fortran compiler: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpifort -- works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpifort supports Fortran 90 -- Checking whether /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/bin/mpifort supports Fortran 90 -- yes -- CMAKE_Fortran_COMPILER_WORKS =TRUE -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- C;CXX;Fortran

adios configured as follows:

-- Configuring done -- Generating done -- Build files have been written to: /home/rkube/repos/ADIOS/build ...

build$ make [ 11%] Building C object src/CMakeFiles/adios.dir/write/adios_posix.c.o /home/rkube/repos/ADIOS/src/write/adios_posix.c: In function ‘adios_posix_write_pg’: /home/rkube/repos/ADIOS/src/write/adios_posix.c:739:32: error: ‘struct adios_POSIX_data_struct’ has no member named ‘rank’ fd->name, p->rank, strerror(errno));

pnorbert commented 4 years ago

Do you have HAVE_MPI on?

$ grep HAVE_MPI config.h

define HAVE_MPI 1

Actually, I see the reason for the error when compiling with gcc (not mpicc) and so should always see the error when building the non-mpi version of the library. But your error message is when building the MPI version.

rkube commented 4 years ago

Ah, this was not defined. I've defined HAVE_MPI. Now there are lots of errors in the HDF5 part of adios:

Scanning dependencies of target bp2h5 [ 72%] Building C object utils/bp2h5/CMakeFiles/bp2h5.dir/bp2h5.c.o In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:398:30: error: conflicting types for ‘MPI_Offset’ typedef OMPI_MPI_OFFSET_TYPE MPI_Offset; ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:32:18: note: previous declaration of ‘MPI_Offset’ was here typedef uint64_t MPI_Offset; ^~~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:400:37: error: conflicting types for ‘MPI_Comm’ typedef struct ompi_communicator_t MPI_Comm; ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:27:13: note: previous declaration of ‘MPI_Comm’ was here typedef int MPI_Comm; ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:401:33: error: conflicting types for ‘MPI_Datatype’ typedef struct ompi_datatype_t MPI_Datatype; ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:31:13: note: previous declaration of ‘MPI_Datatype’ was here typedef int MPI_Datatype; / Store the byte size of a type in such vars / ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:403:29: error: conflicting types for ‘MPI_File’ typedef struct ompi_file_t MPI_File; ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:29:13: note: previous declaration of ‘MPI_File’ was here typedef int MPI_File; ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:405:29: error: conflicting types for ‘MPI_Info’ typedef struct ompi_info_t MPI_Info; ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:30:13: note: previous declaration of ‘MPI_Info’ was here typedef int MPI_Info; ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:406:27: error: conflicting types for ‘MPI_Op’ typedef struct ompi_op_t *MPI_Op; ^~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:36:28: note: previous declaration of ‘MPI_Op’ was here typedef enum mpi_operation MPI_Op; ^~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:409:37: error: conflicting types for ‘MPI_Status’ typedef struct ompi_status_public_t MPI_Status; ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:28:18: note: previous declaration of ‘MPI_Status’ was here typedef uint64_t MPI_Status; ^~~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:479: warning: "MPI_ANY_SOURCE" redefined

define MPI_ANY_SOURCE -1 / match any source rank /

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:64: note: this is the location of the previous definition

define MPI_ANY_SOURCE 0

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:482: warning: "MPI_ANY_TAG" redefined

define MPI_ANY_TAG -1 / match any message tag /

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:65: note: this is the location of the previous definition

define MPI_ANY_TAG 0

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:483: warning: "MPI_MAX_PROCESSOR_NAME" redefined

define MPI_MAX_PROCESSOR_NAME OPAL_MAX_PROCESSOR_NAME / max proc. name length /

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:69: note: this is the location of the previous definition

define MPI_MAX_PROCESSOR_NAME 32

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:484: warning: "MPI_MAX_ERROR_STRING" redefined

define MPI_MAX_ERROR_STRING OPAL_MAX_ERROR_STRING / max error message length /

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:44: note: this is the location of the previous definition

define MPI_MAX_ERROR_STRING 512

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:520: warning: "MPI_MODE_RDONLY" redefined

define MPI_MODE_RDONLY 2 / ADIO_RDONLY /

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:45: note: this is the location of the previous definition

define MPI_MODE_RDONLY O_RDONLY

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:531: warning: "MPI_SEEK_SET" redefined

define MPI_SEEK_SET 600

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:46: note: this is the location of the previous definition

define MPI_SEEK_SET SEEK_SET

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:532: warning: "MPI_SEEK_CUR" redefined

define MPI_SEEK_CUR 602

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:47: note: this is the location of the previous definition

define MPI_SEEK_CUR SEEK_CUR

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:533: warning: "MPI_SEEK_END" redefined

define MPI_SEEK_END 604

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:48: note: this is the location of the previous definition

define MPI_SEEK_END SEEK_END

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:835: warning: "MPI_COMM_NULL" redefined

define MPI_COMM_NULL OMPI_PREDEFINED_GLOBAL(MPI_Comm, ompi_mpi_comm_null)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:51: note: this is the location of the previous definition

define MPI_COMM_NULL 0

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:840: warning: "MPI_INFO_NULL" redefined

define MPI_INFO_NULL OMPI_PREDEFINED_GLOBAL(MPI_Info, ompi_mpi_info_null)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:49: note: this is the location of the previous definition

define MPI_INFO_NULL 0

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:842: warning: "MPI_FILE_NULL" redefined

define MPI_FILE_NULL OMPI_PREDEFINED_GLOBAL(MPI_File, ompi_mpi_file_null)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:67: note: this is the location of the previous definition

define MPI_FILE_NULL 0

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1121: warning: "MPI_COMM_WORLD" redefined

define MPI_COMM_WORLD OMPI_PREDEFINED_GLOBAL( MPI_Comm, ompi_mpi_comm_world)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:52: note: this is the location of the previous definition

define MPI_COMM_WORLD 1

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1122: warning: "MPI_COMM_SELF" redefined

define MPI_COMM_SELF OMPI_PREDEFINED_GLOBAL(MPI_Comm, ompi_mpi_comm_self)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:53: note: this is the location of the previous definition

define MPI_COMM_SELF 2

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1145: warning: "MPI_BYTE" redefined

define MPI_BYTE OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_byte)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:61: note: this is the location of the previous definition

define MPI_BYTE (MPI_CHAR)

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1147: warning: "MPI_CHAR" redefined

define MPI_CHAR OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_char)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:56: note: this is the location of the previous definition

define MPI_CHAR 2

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1149: warning: "MPI_INT" redefined

define MPI_INT OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_int)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:55: note: this is the location of the previous definition

define MPI_INT 1

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1151: warning: "MPI_FLOAT" redefined

define MPI_FLOAT OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_float)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:57: note: this is the location of the previous definition

define MPI_FLOAT 3

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1152: warning: "MPI_DOUBLE" redefined

define MPI_DOUBLE OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_double)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:58: note: this is the location of the previous definition

define MPI_DOUBLE 4

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1170: warning: "MPI_UNSIGNED_LONG_LONG" redefined

define MPI_UNSIGNED_LONG_LONG OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_unsigned_long_long)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:60: note: this is the location of the previous definition

define MPI_UNSIGNED_LONG_LONG 6

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1206: warning: "MPI_REAL" redefined

define MPI_REAL OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_real)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:62: note: this is the location of the previous definition

define MPI_REAL (MPI_FLOAT)

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1240: warning: "MPI_UINT64_T" redefined

define MPI_UINT64_T OMPI_PREDEFINED_GLOBAL(MPI_Datatype, ompi_mpi_uint64_t)

In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:59: note: this is the location of the previous definition

define MPI_UINT64_T 5

In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1288:20: error: conflicting types for ‘MPI_Allgather’ OMPI_DECLSPEC int MPI_Allgather(const void sendbuf, int sendcount, MPI_Datatype sendtype, ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:85:5: note: previous declaration of ‘MPI_Allgather’ was here int MPI_Allgather(void sendbuf, int sendcount, MPI_Datatype sendtype, ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1302:20: error: conflicting types for ‘MPI_Allreduce’ OMPI_DECLSPEC int MPI_Allreduce(const void sendbuf, void recvbuf, int count, ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:92:5: note: previous declaration of ‘MPI_Allreduce’ was here int MPI_Allreduce(const void sendbuf, void recvbuf, int count, ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1324:20: error: conflicting types for ‘MPI_Barrier’ OMPI_DECLSPEC int MPI_Barrier(MPI_Comm comm); ^~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:74:5: note: previous declaration of ‘MPI_Barrier’ was here int MPI_Barrier(MPI_Comm comm); ^~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1326:20: error: conflicting types for ‘MPI_Bcast’ OMPI_DECLSPEC int MPI_Bcast(void buffer, int count, MPI_Datatype datatype, ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:75:5: note: previous declaration of ‘MPI_Bcast’ was here int MPI_Bcast(void buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1367:20: error: conflicting types for ‘MPI_Comm_dup’ OMPI_DECLSPEC int MPI_Comm_dup(MPI_Comm comm, MPI_Comm newcomm); ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:77:5: note: previous declaration of ‘MPI_Comm_dup’ was here int MPI_Comm_dup(MPI_Comm comm, MPI_Comm newcomm); ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1370:25: error: conflicting types for ‘MPI_Comm_f2c’ OMPI_DECLSPEC MPI_Comm MPI_Comm_f2c(MPI_Fint comm); ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:81:10: note: previous declaration of ‘MPI_Comm_f2c’ was here MPI_Comm MPI_Comm_f2c(MPI_Fint comm); ^~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1372:20: error: conflicting types for ‘MPI_Comm_free’ OMPI_DECLSPEC int MPI_Comm_free(MPI_Comm comm); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:80:5: note: previous declaration of ‘MPI_Comm_free’ was here int MPI_Comm_free(MPI_Comm comm); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1402:20: error: conflicting types for ‘MPI_Comm_rank’ OMPI_DECLSPEC int MPI_Comm_rank(MPI_Comm comm, int rank); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:78:5: note: previous declaration of ‘MPI_Comm_rank’ was here int MPI_Comm_rank(MPI_Comm comm, int rank); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1409:20: error: conflicting types for ‘MPI_Comm_size’ OMPI_DECLSPEC int MPI_Comm_size(MPI_Comm comm, int size); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:79:5: note: previous declaration of ‘MPI_Comm_size’ was here int MPI_Comm_size(MPI_Comm comm, int size); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1417:20: error: conflicting types for ‘MPI_Comm_split’ OMPI_DECLSPEC int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm newcomm); ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:103:5: note: previous declaration of ‘MPI_Comm_split’ was here int MPI_Comm_split ( MPI_Comm comm, int color, int key, MPI_Comm comm_out ); ^~~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1442:20: error: conflicting types for ‘MPI_File_open’ OMPI_DECLSPEC int MPI_File_open(MPI_Comm comm, const char filename, int amode, ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:95:5: note: previous declaration of ‘MPI_File_open’ was here int MPI_File_open(MPI_Comm comm, char filename, int amode, MPI_Info info, MPI_File fh); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1444:20: error: conflicting types for ‘MPI_File_close’ OMPI_DECLSPEC int MPI_File_close(MPI_File fh); ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:96:5: note: previous declaration of ‘MPI_File_close’ was here int MPI_File_close(MPI_File fh); ^~~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1448:20: error: conflicting types for ‘MPI_File_get_size’ OMPI_DECLSPEC int MPI_File_get_size(MPI_File fh, MPI_Offset size); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:97:5: note: previous declaration of ‘MPI_File_get_size’ was here int MPI_File_get_size(MPI_File fh, MPI_Offset size); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1474:20: error: conflicting types for ‘MPI_File_read’ OMPI_DECLSPEC int MPI_File_read(MPI_File fh, void buf, int count, ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:98:5: note: previous declaration of ‘MPI_File_read’ was here int MPI_File_read(MPI_File fh, void buf, int count, MPI_Datatype datatype, MPI_Status status); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1490:20: error: conflicting types for ‘MPI_File_seek’ OMPI_DECLSPEC int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:99:5: note: previous declaration of ‘MPI_File_seek’ was here int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1534:20: error: conflicting types for ‘MPI_Gather’ OMPI_DECLSPEC int MPI_Gather(const void sendbuf, int sendcount, MPI_Datatype sendtype, ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:83:5: note: previous declaration of ‘MPI_Gather’ was here int MPI_Gather(void sendbuf, int sendcnt, MPI_Datatype sendtype, void recvbuf, int recvcnt, MPI_Datatype recvtype, int root, MPI_Comm comm) ; ^~~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1540:20: error: conflicting types for ‘MPI_Gatherv’ OMPI_DECLSPEC int MPI_Gatherv(const void sendbuf, int sendcount, MPI_Datatype sendtype, ^~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:84:5: note: previous declaration of ‘MPI_Gatherv’ was here int MPI_Gatherv(void sendbuf, int sendcnt, MPI_Datatype sendtype, void recvbuf, int recvcnts, int displs, MPI_Datatype recvtype, int root, MPI_Comm comm); ^~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1547:20: error: conflicting types for ‘MPI_Get_count’ OMPI_DECLSPEC int MPI_Get_count(const MPI_Status status, MPI_Datatype datatype, int count); ^~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:101:5: note: previous declaration of ‘MPI_Get_count’ was here int MPI_Get_count(MPI_Status status, MPI_Datatype datatype, int count); ^~~~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1750:20: error: conflicting types for ‘MPI_Scatter’ OMPI_DECLSPEC int MPI_Scatter(const void sendbuf, int sendcount, MPI_Datatype sendtype, ^~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:89:5: note: previous declaration of ‘MPI_Scatter’ was here int MPI_Scatter(void sendbuf, int sendcnt, MPI_Datatype sendtype, void recvbuf, int recvcnt, MPI_Datatype recvtype, int root, MPI_Comm comm); ^~~ In file included from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/H5public.h:60, from /usr/local/hdf5/gcc/openmpi-4.0.3rc1/1.10.5/include/hdf5.h:22, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:39: /usr/local/openmpi/4.0.3rc1/devtoolset-8/ppc64le/include/mpi.h:1756:20: error: conflicting types for ‘MPI_Scatterv’ OMPI_DECLSPEC int MPI_Scatterv(const void sendbuf, const int sendcounts[], const int displs[], ^~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_mpi.h:13, from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:19, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/mpidummy.h:90:5: note: previous declaration of ‘MPI_Scatterv’ was here int MPI_Scatterv(void sendbuf, int sendcnts, int displs, MPI_Datatype sendtype, void recvbuf, int recvcnt, MPI_Datatype recvtype, int root, MPI_Comm comm); ^~~~ /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c: In function ‘main’: /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:114:44: warning: passing argument 2 of ‘adios_fopen_v1’ makes integer from pointer without a cast [-Wint-conversion] ADIOS_FILE f = adios_fopen (argv[1], comm_dummy); ^~~~~~ In file included from /home/rkube/repos/ADIOS/src/public/adios_read_v1.h:20, from /home/rkube/repos/ADIOS/src/public/adios_read.h:15, from /home/rkube/repos/ADIOS/utils/bp2h5/bp2h5.c:36: /home/rkube/repos/ADIOS/src/public/adios_read_v1_defs.h:35:21: note: expected ‘MPI_Comm’ {aka ‘int’} but argument is of type ‘MPI_Comm’ {aka ‘struct ompi_communicator_t ’}

define adios_fopen adios_fopen_v1

                 ^~~~~~~~~~~~~~

/home/rkube/repos/ADIOS/src/public/adios_read_v1.h:154:14: note: in expansion of macro ‘adios_fopen’ ADIOS_FILE adios_fopen (const char fname, MPI_Comm comm); ^~~ make[2]: [utils/bp2h5/CMakeFiles/bp2h5.dir/build.make:63: utils/bp2h5/CMakeFiles/bp2h5.dir/bp2h5.c.o] Error 1 make[1]: [CMakeFiles/Makefile2:1455: utils/bp2h5/CMakeFiles/bp2h5.dir/all] Error 2 make: *** [Makefile:130: all] Error 2

pnorbert commented 4 years ago

I did not mean you to define it. This should have been automatic, when using the mpi compiler.