pnorbert
commented
2 months ago I am not able to reproduce this issue on ubuntu. I am a bit suspicious about the location of that libhdf5.so.200 file.
- How did you install HDF5 and which version?
- What is the output of
bpls -Vv? - In your ADIOS2 build directory, what is the output for
$ grep ADIOS2_HAVE_HDF5 source/adios2/common/ADIOSConfig.h
When trying to analyze a h5 file written with ADIOS2 using bpls test.h5 it bails out with the following error message:
Failed to open with HDF5 engine: [] [ADIOS2 EXCEPTION] : ERROR: this version didn't compile with HDF5 library, can not use HDF5 engine
This error occurs with ADIOS2 >= 2.10.0. The version 9.2.0 does not show this error instead it lists the content of the file as expected. I checked with readelf -d bpls and also ldd bpls that the program is linked with libhdf5.so. In my case libhdf5.so.200 from /usr/lib64/mpi/gcc/openmpi4/lib64.
To Reproduce I compiled both version from source using: git clone https://github.com/ornladios/ADIOS2.git git checkout v9.2.0 or git checkout v2.10.0 mkdir build cd build cmake .. make cd bin bpls ../../../test.h5
Expected behavior As the result from cmake showed that both HF5 and MPI are ON I expected to be able to list the content of the HDF5 file using bpls.
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