ornlneutronimaging / iMars3D

Preprocessing and reconstruction for the Neutron Imaging Beam Lines
https://imars3d.readthedocs.io
BSD 3-Clause "New" or "Revised" License
4 stars 6 forks source link

problem with tomopy 1.11 #135

Open yxqd opened 2 years ago

yxqd commented 2 years ago

Tried a fresh install of imars3d (conda-forge channel added)

$ conda create -n imars3d-py38 python=3.8
$ conda install pytest pyyaml numpy scipy matplotlib astropy mpi4py mpich psutil scikit-image tomopy dxchange progressbar2

When running test tests/imars3d/recon/test_mpi.py, got an error

INTEL MKL ERROR: /.../miniconda3/envs/imars3d-py38/lib/python3.8/site-packages/mkl_fft/../../../libmkl_core.so.1: invalid ELF header.
Intel MKL FATAL ERROR: Cannot load libmkl_core.so.1.                                                                                

when tomopy 1.11 is used.

yxqd commented 2 years ago

It could be related to the mkl conda package? The one installed with tomopy 1.10.1 is 2020.4. The one installed with tomopy 1.11 is 2021.4.