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oruebel / ndx-icephys-meta

NWB extensions for origanizing intracellular electrophysiology metadata
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Tests fail #69

Closed rly closed 3 years ago

rly commented 4 years ago

With the dev branch of PyNWB and HDMF, I get the following test errors:

============================================================== short test summary info ============================================================== FAILED src/pynwb/ndx_icephys_meta/test/test_aligned_dynamic_table_container.py::TestAlignedDynamicTableContainer::test_round_trip_container - Excep...

FAILED src/pynwb/ndx_icephys_meta/test/test_aligned_dynamic_table_container.py::TestAlignedDynamicTableContainer::test_to_dataframe - AttributeErro...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_add_row - Exception: Container 'intracellular_recor...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_add_row_no_response - Exception: Container 'intrace...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_add_row_no_stimulus - Exception: Container 'intrace...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_basic_write - Exception: Container 'intracellular_r...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_round_trip_container_no_data - Exception: Container...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::IntracellularRecordingsTableTests::test_write_with_stimulus_template - Exception: Container...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::SimultaneousRecordingsTableTests::test_basic_write - Exception: Container 'intracellular_re...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::SequentialRecordingsTableTests::test_basic_write - Exception: Container 'intracellular_reco...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::RepetitionsTableTests::test_basic_write - Exception: Container 'intracellular_recordings' (...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::ExperimentalConditionsTableTests::test_basic_write - Exception: Container 'intracellular_re...

FAILED src/pynwb/ndx_icephys_meta/test/test_icephys.py::ICEphysFileTests::test_add_icephys_meta_full_roundtrip - Exception: Container 'intracellula...

===================================================== 13 failed, 58 passed, 1 skipped in 28.71s =====================================================

There are several different errors: ValueError: Must supply 'columns' if specifying 'colnames' AttributeError: 'Int64Index' object has no attribute 'data' AttributeError: 'IntracellularRecordingsTable' object has no attribute 'electrodes'

oruebel commented 3 years ago

Fixed in merge of the extension with NWB core (incl PyNWB and HDMF)