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oschakoory / RiboTaxa

RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
https://academic.oup.com/nargab/article/4/3/lqac070/6708509
GNU Affero General Public License v3.0
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Version of scikit-learn #5

Closed jeffe107 closed 1 year ago

jeffe107 commented 1 year ago

Hi,

Thank you for such great pipeline. I installed it, although while running it, there was a problem with the scikit-learn classifying step:

The scikit-learn version (0.23.1) used to generate this artifact does not match the current version of scikit-learn installed (0.24.1). Please retrain your classifier for your current deployment to prevent data-corruption errors.

I tried to downgrade the scikit-learn through mamba (conda is extremely slow), and I obtained this error:

package q2-diversity-2022.11.1-py38_0 requires scikit-learn 0.24.1.*, but none of the providers can be installed.

Do you have any idea about how to solve this inconvenient?

oschakoory commented 1 year ago

Hi, please verify the version of qiime2 database. It should be qiime2022.11.

Else you can also download it directly from here:

https://ucafr-my.sharepoint.com/personal/oshma_chakoory_uca_fr/_layouts/15/onedrive.aspx?id=%2Fpersonal%2Foshma%5Fchakoory%5Fuca%5Ffr%2FDocuments%2FDatabases&ga=1

Do not hesitate if you have any question.

Oshma Chakoory