search

oschwengers / asap

A scalable bacterial genome assembly, annotation and analysis pipeline
https://doi.org/10.1371/journal.pcbi.1007134
GNU General Public License v3.0
70 stars 19 forks source link

add input support #14

Closed zsgit01 closed 4 years ago

zsgit01 commented 4 years ago

This pipeline generates nice report. I have illumine single-end and pacbio sequel data. I would like to assemble using hybrid mode. Currently, the only hybrid mode supported is nanopore-pe. Can you add that support?

oschwengers commented 4 years ago

Hi @zsgit01 , a PacBio/Illumina hybrid assembly shouldn't be much of a problem. However, I'm not quite sure about the Illumina single-end reads. I'll check that and put it on the list for the next release.

zsgit01 commented 4 years ago

That is great! Thank you.