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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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Merge summary files into one excel sheet. #246

Closed AhmedElsherbini closed 1 year ago

AhmedElsherbini commented 1 year ago

Hello, firstly thanks for your nice tool.

For me, as I work with many genomes per run, I just needed a simple feature, which is just merging the summary txt files into one simple Excel sheet. I have already made this simple script named Bakta_stats. I hope it will be easy to use and offer any help to any colleague with similar need.

oschwengers commented 1 year ago

Hi @AhmedElsherbini , thanks for reaching out and your script. Your issue triggered me to add a general script collection directory, see #251 . For mere code maintenance, I re-implemented your script and added another I've written some time ago.

So, thanks a lot! I'll close this for now, but please, do not hesitate to re-open it just in case, this does not fit your needs or anything else. Best!

AhmedElsherbini commented 1 year ago

Thank you very much for your reply. Kindly, if my script was somehow helpful for you, I would be very grateful for any kind of acknowledgment or reference (up to you). I was also thinking of converting the output of this script into some graphical abstract, as simple as Python matplotlib boxplots or as complex as MultiQC HTML output.

oschwengers commented 1 year ago

Of course, proper acknowledgments are self-evident ;-) I normally give credits to everyone somehow involved in the description of each release.