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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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Improve PILER-CR CRISPR parser #248

Closed oschwengers closed 1 year ago

oschwengers commented 1 year ago

This PR expands the PILER-CR parser of the CRISPR array detection to extract, store and output repeats and spacers.

Repeats & spacers are written to JSON, GFF3 and TSV outputs, only, since INSDC does not have dedicated feature keys to represent these features (please do reach out to me, if I missed something here).

oschwengers commented 1 year ago

needs a rebase. close and open a new one .oO