Closed oschwengers closed 1 year ago
Often, the usage of Bakta is a necessary upfront task followed by deeper analyses implemented in custom scripts.
Therefore, we introduce a new directory scripts where we'd like to collect & offer a pool of scripts addressing common tasks.
As a starter:
collect-annotation-stats.py
TSV
extract-region.py
GFF3
Embl
Genbank
FAA
FFN
Of course, pull requests are welcome ;-)
This is a merger of a region extraction script I wrote some time ago and #246 - thanks @AhmedElsherbini ;-)
Often, the usage of Bakta is a necessary upfront task followed by deeper analyses implemented in custom scripts.
Therefore, we introduce a new directory scripts where we'd like to collect & offer a pool of scripts addressing common tasks.
As a starter:
collect-annotation-stats.py
: Collect annotation stats for a cohort of genomes and print a condensedTSV
.extract-region.py
: Extract genome features within a given genomic range and export them asGFF3
,Embl
,Genbank
,FAA
andFFN
Of course, pull requests are welcome ;-)