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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
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CRISPR position doesn't include last spacer #276

Closed oschwengers closed 8 months ago

oschwengers commented 8 months ago

For some reasons, Pilcer-CR does not include the array's last spacer in the position of the entire array:

contig_1    PILER-CR    CRISPR  20141   20306   .   ?   .   ID=AAAAAAAAAA_1;Name=CRISPR array with 3 repeats of length 22, consensus sequence CGGGGCTGAAGGAACTGGCCGC and spacer length 50;product=CRISPR array with 3 repeats of length 22, consensus sequence CGGGGCTGAAGGAACTGGCCGC and spacer length 50
contig_1    PILER-CR    crispr-repeat   20141   20162   .   ?   .   ID=AAAAAAAAAA_1_repeat_1
contig_1    PILER-CR    crispr-spacer   20163   20212   .   ?   .   ID=AAAAAAAAAA_1_spacer_1;sequence=ACTCGGGGGCCTGAAGGAACTGGACCTTTCCGCCACCAAGGTCACTGATG
contig_1    PILER-CR    crispr-repeat   20213   20234   .   ?   .   ID=AAAAAAAAAA_1_repeat_2
contig_1    PILER-CR    crispr-spacer   20235   20284   .   ?   .   ID=AAAAAAAAAA_1_spacer_2;sequence=CCTCCGGGACCTGCAGACGTTGAACCTCCACGGCACGAGGCTGACAGGGA
contig_1    PILER-CR    crispr-repeat   20285   20306   .   ?   .   ID=AAAAAAAAAA_1_repeat_3
contig_1    PILER-CR    crispr-spacer   20307   20356   .   ?   .   ID=AAAAAAAAAA_1_spacer_3;sequence=GCTGCATGACTTGCGAGAACTGGACCTCTCCATGAGCGACGTGACGGACG