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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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fix(create_cdss): Handle different translation tables in meta mode #301

Closed ohickl closed 4 months ago

ohickl commented 4 months ago

Update CDS creation process to use the translation table that pyrodigal used for gene prediction in meta mode. This ensures accurate translation of genes across different genetic codes.

Previously, metagenome contigs predicted with translation table 4 were incorrectly translated with table 11, resulting in amino acid sequences with numerous internal stop codons ('*').

oschwengers commented 4 months ago

Hi @ohickl , thank you very much for reporting and fixing this! I wasn't ware of it.