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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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Bakta web version ignores translation table change #305

Closed AggressiveHayBale closed 2 months ago

AggressiveHayBale commented 2 months ago

Description Accessing the current version of web version of Bakta (Software: 1.9.1| DB: 5.0.0) and selecting Translational table: 4: The Mold... results in the Bakta execution on the default table 11, ignoring the selection.

Step to replicate Annotate the genome while changing the translational table 11 to 4.

Output The output json reports:

{
    "genome": {
        "genus": null,
        "species": null,
        "strain": null,
        "complete": true,
        "gram": "?",
        "translation_table": 11
    }

I assume somewhere in the web version code either referring to this parameter is overwritten or the selection in the web GUI goes nowhere (I couldn't find the code related to the web code in the repo).

oschwengers commented 2 months ago

Hi @AggressiveHayBale , thanks a lot for reporting. I'll copy/forward this to the right repo (https://github.com/ag-computational-bio/bakta-web-ui) and close it here, since it's addressing the web version and not the CLI version itself.