.conda/envs/bakta/lib/python3.10/site-packages/bakta/main.py", line 150, in main genome['features'][bc.FEATURE_T_RNA] = t_rna.predict_t_rnas(genome, contigs_path)

oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

GNU General Public License v3.0

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.conda/envs/bakta/lib/python3.10/site-packages/bakta/main.py", line 150, in main genome['features'][bc.FEATURE_T_RNA] = t_rna.predict_t_rnas(genome, contigs_path) #310

Closed davidmadariaga closed 1 week ago

davidmadariaga commented 3 months ago

Hi, hope you are doing great!, could you please help me with this? whats going on?¿? a few months ago bakta worked very well :( T.T, this is happening to each genome (217 in total).

thanks in advance,

cheers from Chile, South America.

oschwengers commented 3 months ago

Hi, could you please provide the log as a text? I cannot read it from the image. Also, have you tried to update, re-install or try a fresh conda environment? Just to assure that this is actually related to bakta and not to Conda or some other tools/dependencies?

oschwengers commented 1 month ago

Is this still an issue?