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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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conda install did not install bakta_db #313

Open JCSzamosi opened 2 months ago

JCSzamosi commented 2 months ago

I followed the instructions to install bakta using conda, and it appears to have successfully installed, but the program bakta_db is absent (which bakta_db returns nothing) and I don't see another way to install it.

Was it supposed to install with bakta? And if not, how do I install it? Or do I not need it as long as I download the databases and can provide bakta with the path to them?

fraser-combe commented 2 months ago

You need to read the database download section on the bakta main page. you have light or full db version. the conda env does not download

JCSzamosi commented 2 months ago

Thanks for your response! Just to clarify, I don't mean the database itself is missing. The program bakta_db, which you say to use to download the databases, was not installed with the conda installation. I was able to download the databases manually and run bakta, just thought I would let you know those instructions don't work if a person has used the conda installation instructions.

oschwengers commented 2 months ago

Thanks @JCSzamosi for reporting. Unfortunately, I cannot reproduce this. I leave this open for a while, just in case others are facing the same issue.