And the database was downloaded using the following command:
bakta_db download --type full
While running bakta for a metagenome assembly (2009015 Contigs, 135329 Contigs >1000 bp), it stuck at "predict tRNAs..." step though it is generating file trna.fasta and trna.tsv of 0 size.
Here is the version and build of few installed pkg in bakta env
bakta=1.9.4=pyhdfd78af_0
aragorn=1.2.41=h031d066_3
blast=2.16.0=hc155240_2
diamond=2.1.8=h43eeafb_0
infernal=1.1.5=pl5321h031d066_2
pyrodigal=3.5.1=py310h7c593f9_1
python=3.10.14=hd12c33a_0_cpython
trnascan-se=2.0.12=pl5321h031d066_0
I have installed bakta using the following command:
And the database was downloaded using the following command:
While running bakta for a metagenome assembly (2009015 Contigs, 135329 Contigs >1000 bp), it stuck at "predict tRNAs..." step though it is generating file trna.fasta and trna.tsv of 0 size.
Here is the version and build of few installed pkg in bakta env bakta=1.9.4=pyhdfd78af_0 aragorn=1.2.41=h031d066_3 blast=2.16.0=hc155240_2 diamond=2.1.8=h43eeafb_0 infernal=1.1.5=pl5321h031d066_2 pyrodigal=3.5.1=py310h7c593f9_1 python=3.10.14=hd12c33a_0_cpython trnascan-se=2.0.12=pl5321h031d066_0