Add signal peptide predictions

oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

GNU General Public License v3.0

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Add signal peptide predictions #32

Closed oschwengers closed 2 years ago

oschwengers commented 3 years ago

Uuse DeepSig (GPL3) to predict signal peptides and cleavage sites.

GH: https://github.com/BolognaBiocomp/deepsig
DOI: https://doi.org/10.1093/bioinformatics/btx818

oschwengers commented 2 years ago

We'd like to expand CI tests to Python versions 3.8 and 3.9. However, we had to remove 3.9 from CI tests due to TensorFlow und Keras dependency restrictions that are not available for Python > 3.8.

This is fixed by https://github.com/BolognaBiocomp/deepsig/pull/30