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oschwengers / bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
GNU General Public License v3.0
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Issue with Dockerfile file #342

Closed pamelacamejom closed 16 hours ago

pamelacamejom commented 2 weeks ago

Hi, I am trying to build a docker using the dockerfile (I need to use the new --skip-filer option), however I have the following issue when I try building this docker:

bin/micromamba The following argument was not expected: -p Run with --help for more information. The command '/bin/sh -c apk update && apk add wget tar bash && wget -q -O /etc/apk/keys/sgerrand.rsa.pub https://alpine-pkgs.sgerrand.com/sgerrand.rsa.pub && wget https://github.com/sgerrand/alpine-pkg-glibc/releases/download/2.32-r0/glibc-2.32-r0.apk && apk add glibc-2.32-r0.apk && rm glibc-2.32-r0.apk && wget --no-iri -qO- https://micromamba.snakepit.net/api/micromamba/linux-64/latest | tar -xvj bin/micromamba && touch /root/.bashrc && ./bin/micromamba shell init -s bash -p /opt/conda && cp /root/.bashrc /opt/conda/bashrc' returned a non-zero code: 109

oschwengers commented 21 hours ago

Hi @pamelacamejom , thanks for reporting, and sorry, somehow I must have missed this issue. There is a PR (#345 ) fixing this. I'll release a patch v1.10.1 ASAP once the PR is accepted.