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oschwengers
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platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
https://doi.org/10.1099/mgen.0.000398
GNU General Public License v3.0
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Platon for long-read contigs?
#47
ranitori
closed
4 months ago
2
"Marker protein search failed!" error after execution
#46
alex-trist
opened
6 months ago
9
Marker protein search failed! and ERROR - MAIN - diamond execution failed! diamond-error-code=-11
#45
bayraktar1
closed
7 months ago
3
Error: No module named 'platon.platon' As #21
#44
bielGarcias
closed
8 months ago
0
diamond version
#43
Dabiguina94
closed
7 months ago
2
Candidate Release v1.7.0
#42
oschwengers
closed
1 year ago
0
execution problem
#41
kimTina321
closed
1 year ago
3
Option to see the 'hits' in the results
#40
lorcan1601
closed
1 year ago
1
Any plans for enabling user to use custom database like COMPASS
#39
Rohit-Satyam
opened
1 year ago
1
Strange output - is it normal?
#38
Gian77
closed
1 year ago
2
Where can we find version of the RefSeq plasmid database used?
#37
mdiricks
closed
1 year ago
1
genome fasta file UNRECOGNIZED
#36
RightCake1
closed
1 year ago
5
IndexError: list index out of range error
#35
hbucqp
closed
1 year ago
1
Platon report Mobilization and Conjugation
#34
elina2410
closed
2 years ago
2
minor typo in readme Description section
#33
franciscozorrilla
closed
2 years ago
0
Trouble testing on chromosomes
#32
Liqueurdefehling
closed
1 year ago
9
RDS is always 0.0
#31
barbaracania
opened
2 years ago
7
--meta missing
#30
pbelmann
closed
1 year ago
2
Differences between .log and plasmid.fasta file
#29
tthye1
closed
2 years ago
3
The number of contigs in plasmid.fasta is not the same as the number of contigs in .tsv
#28
xuanji2017
closed
2 years ago
3
Permission denied: 'prodigal'
#27
zhichusun
closed
2 years ago
1
Blast contig results
#26
tthye1
closed
2 years ago
7
Platon is Time-Intensive
#25
joshuakirsch
closed
2 years ago
4
Interpretation of results
#24
franciscozorrilla
closed
2 years ago
1
Running multiple samples
#23
mmfacun
closed
3 years ago
2
ERROR: database file (orit.nhr) not readable!
#22
alexlevylab
closed
3 years ago
2
Error: No module named 'platon.platon'
#21
androga2
closed
3 years ago
1
Issue updating Platon v1.6
#20
Dey497
closed
3 years ago
4
Plasmid verification
#19
Handymanalan
closed
3 years ago
4
Should all plasmids really have OriT sequences?
#18
KTbiotech
closed
3 years ago
2
result are all plasmids
#17
Wanli-HE
closed
3 years ago
2
Error occurs while trying to run Platon
#16
Rajeefa
closed
3 years ago
9
ERROR: genome file not readable!
#15
Dey497
closed
3 years ago
2
platon: error: unrecognized arguments: assembly.fasta
#14
ZhangDengwei
closed
4 years ago
3
Incorporate latest RefSeq Reference Plasmid database files
#13
tdcollingsworth
closed
4 years ago
3
Marker protein search failed!
#12
Wanli-HE
closed
4 years ago
8
Known plasmid genes detected in the chromosome
#11
clabe-wekesa
closed
4 years ago
5
ERROR - diamond execution failed! diamond-error-code=-4
#10
clabe-wekesa
closed
4 years ago
8
automatically recognise db_path with conda installation
#9
noeldjitro
closed
4 years ago
1
Platon can not get ORF id
#8
chen1i6c04
closed
4 years ago
4
Allow specification of output file prefix (not just path)
#7
crarlus
closed
4 years ago
3
Problem with running short plasmid sequences
#6
crarlus
closed
4 years ago
4
switch to https://schema.org/version/latest/schema.rdf
#5
mr-c
closed
4 years ago
2
database file (rds.tsv) not readable
#4
Lneffe
closed
4 years ago
13
Revise cwl file
#3
patrick-barth
closed
4 years ago
0
Merge Update to UniProt's Uniref90 protein clusters
#2
oschwengers
closed
4 years ago
0
Error running the package
#1
pavlo888
closed
5 years ago
8