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oschwengers
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referenceseeker
Rapid determination of appropriate reference genomes.
https://doi.org/10.21105/joss.01994
GNU General Public License v3.0
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GTDB last update
#29
GuilhemRoyer
opened
2 months ago
6
Database update
#28
MostafaYA
closed
8 months ago
3
no conda install for Apple Silicon
#27
nick-youngblut
opened
1 year ago
1
Finding a suitable reference for a set of genomes
#26
MostafaYA
opened
2 years ago
3
[BUG] I can't make a custom db with referenceseeker_db init
#25
drelo
closed
2 years ago
2
Add a sliding window parameter for the DNA fragment creation
#24
oschwengers
closed
2 years ago
0
ReferenceSeeker and Metagenome-Assembled Genomes
#23
padbc
closed
2 years ago
2
[Question] Using ReferenceSeeker to cluster draft fungal genomes
#22
Rob-murphys
closed
3 years ago
10
Seemingly successful ReferenceSeeker run with no results.
#21
Rob-murphys
closed
3 years ago
8
ERROR: database file (db.tsv) not readable! on custom database
#20
Rob-murphys
closed
3 years ago
3
<NA/> is being added to the start of file path
#19
Rob-murphys
closed
3 years ago
4
Pre-built databases for other RefSeq sections
#18
Benjamin-Lee
closed
3 years ago
2
rename application entry module
#17
oschwengers
closed
3 years ago
0
Fix tests
#16
oschwengers
closed
3 years ago
0
Reduce DB sizes
#15
oschwengers
closed
3 years ago
0
Provide prebuilt GTDB databases
#14
oschwengers
closed
3 years ago
0
[BUG] IndexError: list index out of range
#13
Jwebster89
closed
3 years ago
1
Debugging output with "base dir" and "share dir"
#12
standage
closed
4 years ago
1
Support for importing protein sequences
#11
standage
closed
4 years ago
7
Add internal checks during custom db creation
#10
oschwengers
closed
4 years ago
0
Empty results for a custom built DB
#9
erelior
closed
4 years ago
3
[BUG] Updating database script errors
#8
samlhao
closed
4 years ago
2
introduce database init and import features #6
#7
oschwengers
closed
4 years ago
0
Feature request: ability to include private data
#6
standage
closed
4 years ago
3
Continuous integration
#5
standage
closed
4 years ago
3
Test suite or instructions
#4
standage
closed
4 years ago
2
Empty matrix
#3
theo-llewellyn
closed
4 years ago
5
Allow user to set conserved_dna and ani threshold
#2
natir
closed
4 years ago
3
Did you want help to create bioconda package
#1
natir
closed
4 years ago
3