Open StromTroopers opened 5 years ago
Hi there, thanks for your interest in the package!
Hm, it should technically be possible, absolutely. I actually thought of something similar with someone else at some point but dropped it for the time being due to time constraints.
I'd be happy to think about it a bit, though am a bit busy at the moment - were you needing a solution to this within a certain time-frame?
Hello, I wondered if it whas possible within a newick tree to count the number of monophyletic groups even if intruders are splitting this group.
Here is an exemple
Let say you have the following three :
((A,A),((B,B),((A,A),A))));
here in that caseA
are species belonging to theGenus A
for instance andB species
from theGenus B
.And here if I use your package I should have a result that shows a
monophyletic group
forspecies B
but not forspecies A
because there is thetwo B species
between them. But what I wanted to know if there were a way to count the number of groups wherespecies A
are grouped together, here a such result should be:Number of groupes shared by A species = 2 Number of groupes shared by B species= 1 Is there any option in order to do that?
Thank you for your help :)