apparent invalid sealifebase spec code for Tylosurus acus: http://sealifebase.org/summary/acus

[jhpoelen]

Steps to reproduce:

1. use Web UI to create a default configuration for Gulf of Mexico
2. download resulting osmose_config.zip (see attached)
3. inspect functional_groups.csv

expected: all species in functional groups have valid sealifebase / fishbase summaries.

actual: on row 317, I found:

functional group name	functional group type	species name	species url
fishreefassociatedlg	focal_functional_group	Tylosurus acus	http://sealifebase.org/summary/acus

note the species url https://sealifebase.org/summary/acus

osmose_config.zip

[jhpoelen]

Please note that other values look ok, e.g.,

functional group name	functional group type	species name	species url
fishflatfishsmmd	focal_functional_group	Paralichthys albigutta	http://fishbase.org/summary/980
fishflatfishsmmd	focal_functional_group	Citharichthys macrops	http://fishbase.org/summary/4214
fishflatfishsmmd	focal_functional_group	Achirus lineatus	http://fishbase.org/summary/4256
cephalopods	focal_functional_group	Octopus vulgaris	http://sealifebase.org/summary/58190
cephalopods	focal_functional_group	Thysanoteuthis rhombus	http://sealifebase.org/summary/58136
cephalopods	focal_functional_group	Todarodes sagittatus	http://sealifebase.org/summary/57559
cephalopods	focal_functional_group	Illex coindetii	http://sealifebase.org/summary/58130
cephalopods	focal_functional_group	Illex illecebrosus	http://sealifebase.org/summary/58129

[jhpoelen]

The unexpected reference to "http://sealifebase.org/summary/acus" appeared in the request sent from the Web UI ( request-from-UI.json.gz ) . Also, the reference appears to be the only malformed fishbase/sealifebase species url judging from the result of below

$ zcat ~/Desktop/request-from-UI.json.gz  | jq .  | grep -P  "base" | grep -P  "summary/([a-z,\"])+$"
          "url": "http://sealifebase.org/summary/acus"
$

[FIN-casey]

Hello @jhpoelen,

Thank you for pointing this out. I updated the wizard to pass a correct link for this.

[jhpoelen]

@FIN-casey thanks! I confirmed that Tylosurus acus acus now points to http://fishbase.org/summary/976 .