All transposons "unknown"

oushujun / EDTA

Extensive de-novo TE Annotator

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y

GNU General Public License v3.0

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All transposons "unknown" #10

Closed ghost closed 5 years ago

ghost commented 5 years ago

Hello, in the file.fa.EDTA.TElib.fa, virtually all transposons are labelled as "unknown": 16712 are unknown 48 are Gypsy Presuming my study organism is not having completely strange transposons, is it the kind of expected statistics?

Thank you

oushujun commented 5 years ago

Hello,

No, this is not normal. You may experience faults when running TIR-Learner. We are fixing this soon. Please hold on for a couple of days.

Best, Shujun

oushujun commented 5 years ago

I just pushed some new updates to EDTA, mainly to fix the TIR-Learner issue. Please reinstall EDTA and rerun it in the same work folder. Existing results will be reused so there is essentially no waste of time. Thank you for your patience and support!

oushujun commented 5 years ago

I consider this issue resolved. Please reopen it if not. Thanks!