repeat_region和target_site_duplication的分类问题

[xizhesun]

区老师您好，

请问GFF文件中被注释为repeat_region和target_site_duplication属于I型还是2型啊？我听您的学术沙龙讲座里说分类的时候没提到这个呢？

另外我用‘mimp_finder.py’ 鉴定的mimps转座子基本都不在EDTA预测的结果里面，软件参见https://github.com/pmhenry/Repertoire_v6。咱们的预测流程里不包括mimps转座子吗？

祝好， Xizhe

[oushujun]

Hello Xizhe,

Please refer to wiki for repeat_region and TSD: https://github.com/oushujun/EDTA/wiki/Making-sense-of-EDTA-usage-and-outputs---Q&A.

I checked out the repertoire github, the mimp_finder pipeline uses TIRmite to search for TIR elements. I don't know the performance of TIRmite or mimp_finder, but you can benchmark it using our established platform described in the EDTA paper and this github (https://github.com/oushujun/EDTA#benchmark).

Best, Shujun

[xizhesun]

OK, I got it. So both repeat_region and TSD were belonged to LTR. Thanks.