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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
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Why the highly similar sequence didn't be annotated as a Mutator transposon? #348

Closed leon945945 closed 1 year ago

leon945945 commented 1 year ago

Initially, I find a 1.2kb sequence insertion on promoter of one certain gene at chr1:14838138-14841138, then I blast it to the whole genome TE sequences annotated by EDTA, it was highly similar with an intact Mutator transposon which located at chr1:14881719-14882938 with only 11 gaps as shown below (query was the 1.2kb insertion sequence, subject was the intact Mutator): 图片1 图片2 They have the identical TIR and only 11 gaps, why the 1.2kb sequence didn't be annotated as a Mutator transposon? Thank you.

oushujun commented 1 year ago

Hello, was this sequence annotated as something else or not at all?