oushujun
commented
1 year ago Please read README or the wiki.
TThanks, Shujun
On Sun, Apr 30, 2023 at 12:45 PM Jiangzhao_Qian @.***> wrote:
Dear Shujun,
I found EDTA will short chromosome name when it is too long and the final $genome.EDTA.intact.gff3 and $genome.EDTA.TEanno.gff3 is based on the modified chromosome name. This will lead to a problem if I want to get fasta sequences based on those gff3 files. I guess there must be a reason you have to modify the name. But that will be good if you can supply a file containing the original and modified chromosome names.
For example, this is my original chromosome name: [image: image] https://user-images.githubusercontent.com/75024559/235365175-ad425505-8549-477b-8c3e-6e85eaf35b99.png But from my $genome.EDTA.intact.gff3 file, they are: [image: image] https://user-images.githubusercontent.com/75024559/235365231-5a5472b8-ecae-4c90-86fa-c1be7fca5f40.png
Yours sincerely Jiangzhao
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Dear Shujun,
I found EDTA will short chromosome name when it is too long and the final $genome.EDTA.intact.gff3 and $genome.EDTA.TEanno.gff3 is based on the modified chromosome name. This will lead to a problem if I want to get fasta sequences based on those gff3 files. I guess there must be a reason you have to modify the name. But that will be good if you can supply a file containing the original and modified chromosome names.
For example, this is my original chromosome name:
But from my $genome.EDTA.intact.gff3 file, they are:
Yours sincerely Jiangzhao