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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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I have a question, why are the.mod.edta.teanno.gff3 and.mod.EDTA.TEanno.out lines different #378

Closed OUC-ZJH closed 10 months ago

OUC-ZJH commented 10 months ago

@oushujun excuse me，I have a question, why are the.mod.edta.teanno.gff3 and.mod.EDTA.TEanno.out lines different

oushujun commented 10 months ago

Can you figure it out?

Shujun

On Mon, Aug 21, 2023 at 11:00 PM OUC-ZJH @.***> wrote:

@oushujun https://github.com/oushujun excuse me，I have a question, why are the.mod.edta.teanno.gff3 and.mod.EDTA.TEanno.out lines different

— Reply to this email directly, view it on GitHub https://github.com/oushujun/EDTA/issues/378#issuecomment-1687342312, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNX4NDGPQ7PSZ73JVAPWXLXWQODXANCNFSM6AAAAAA3ZHNEVE . You are receiving this because you were mentioned.Message ID: @.***>

OUC-ZJH commented 10 months ago

Can you figure it out? Shujun … On Mon, Aug 21, 2023 at 11:00 PM OUC-ZJH @.> wrote: @oushujun https://github.com/oushujun excuse me，I have a question, why are the.mod.edta.teanno.gff3 and.mod.EDTA.TEanno.out lines different — Reply to this email directly, view it on GitHub <#378 (comment)>, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNX4NDGPQ7PSZ73JVAPWXLXWQODXANCNFSM6AAAAAA3ZHNEVE . You are receiving this because you were mentioned.Message ID: @.>

When I finished the analysis, both the sum file and.out output 70,216 transposons, while.gff output a total of 822,636 lines transposons. image image

oushujun commented 10 months ago

Please read: https://github.com/oushujun/EDTA/wiki/Making-sense-of-EDTA-usage-and-outputs---Q&A