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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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Multiple EDTAs in parallel #388

Closed chao77777777 closed 8 months ago

chao77777777 commented 9 months ago

Hi， If many EDTAs are run in parallel, such as six or seven, will it have any impact on the speed of a single detection without saturating the server? Because the identification of some species with larger genomes is very slow after I parallelize it. W, regards

oushujun commented 9 months ago

The IO demand of multiple runs simultaneously will throttle the speed of each run due to the possibility that your hard drives can not catch up with the demand. So yes, negative impacts.

On Fri, Sep 22, 2023 at 5:57 AM chao77777777 @.***> wrote:

Hi， If many EDTAs are run in parallel, such as six or seven, will it have any impact on the speed of a single detection without saturating the server? Because the identification of some species with larger genomes is very slow after I parallelize it. W, regards

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