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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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An empty EDTA.TElib.novel.fa was generated after perform EDTA. #403

Closed Github-Yilei closed 7 months ago

Github-Yilei commented 7 months ago

Hi Shujun,

we annotates a plant genome by runing EDTA with a --curatedlib:(https://sines.eimb.ru/). it's successfully annotated the TEs, however, the EDTA.TElib.novel.fa was empty and the EDTA.TElib.fa only contained sequence of SINEBase.

This seems that no novel TEs was identified？

oushujun commented 7 months ago

Please paste your command here and version used. If you see any errors and warnings, please also paste them here.

Thanks! Shujun

On Fri, Nov 17, 2023 at 1:28 AM Yilei @.***> wrote:

Hi Shujun,

we annotates a plant genome by runing EDTA with a --curatedlib:( https://sines.eimb.ru/). it's successfully annotated the TEs, however, the EDTA.TElib.novel.fa was empty and the EDTA.TElib.fa only contained sequence of SINEBase.

This seems that no novel TEs was identified？

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Github-Yilei commented 7 months ago

Hi Shujun, Thank you for response!  I re-runed the pipeline and the problem was resolved.