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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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no sine? #404

Closed Xinxin0314 closed 5 months ago

Xinxin0314 commented 7 months ago

Hi Ou,

I used this command to identify TEs,

-species others -step all --sensitive 1 -t 20 -anno 1 -evaluate 1 .

But in my "result.sum", only LINE in the result file while no SINE.

However, SINE has been identified in other genomes of this species.

Looking forward to your reply.

Best wishes, Xin

oushujun commented 7 months ago

It's not very sensitive at the moment. Please read more here: https://github.com/oushujun/EDTA/wiki/How-to-prepare-a-curated-library-to-maximize-the-efficacy-of-EDTA

https://github.com/oushujun/EDTA/wiki/Making-sense-of-EDTA-usage-and-outputs---Q&A

oushujun commented 5 months ago

Please try the v2.2.0 version and see if this improved. Thanks!