search

oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
315 stars 70 forks source link

fa file #444

Closed DangPengsanqi closed 3 months ago

DangPengsanqi commented 3 months ago

In the process of using the software, there were many inconsistencies in the results, I extracted a short sequence from the genome to form a fa file, and there was a difference between the prediction results and the full genome fa file, and some TEs were not annotated in the small fa file

oushujun commented 3 months ago

EDTA is designed for TE annotation on whole-genome data, not for small genomic sequences. Please read the wiki for more information. Thanks for using EDTA!

Shujun