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oushujun / EDTA

Extensive de-novo TE Annotator
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y
GNU General Public License v3.0
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Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module) #448

Closed chenHuiRu8 closed 3 months ago

chenHuiRu8 commented 3 months ago

calcDivergenceFromAlign.pl -a Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module) (@INC contains: /share/home/stu_chenhuiru/miniconda3/bin/.. /share/home/stu_chenhuiru/miniconda3/share/RepeatMasker/util /home/rhubley/projects/RepeatMasker /share/home/stu_chenhuiru/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /share/home/stu_chenhuiru/miniconda3/lib/site_perl/5.26.2 /share/home/stu_chenhuiru/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /share/home/stu_chenhuiru/miniconda3/lib/5.26.2 .) at /share/home/stu_chenhuiru/miniconda3/bin/calcDivergenceFromAlign.pl line 92. BEGIN failed--compilation aborted at /share/home/stu_chenhuiru/miniconda3/bin/calcDivergenceFromAlign.pl line 92. i had already cpan install SearchResult but it didint work out .

chenHuiRu8 commented 3 months ago

calcDivergenceFromAlign.pl Can't locate SearchResult.pm in @INC (you may need to install the SearchResult module) (@INC contains: /share/home/stu_chenhuiru/miniconda3/bin/.. /share/home/stu_chenhuiru/miniconda3/share/RepeatMasker/util /home/rhubley/projects/RepeatMasker /share/home/stu_chenhuiru/miniconda3/lib/site_perl/5.26.2/x86_64-linux-thread-multi /share/home/stu_chenhuiru/miniconda3/lib/site_perl/5.26.2 /share/home/stu_chenhuiru/miniconda3/lib/5.26.2/x86_64-linux-thread-multi /share/home/stu_chenhuiru/miniconda3/lib/5.26.2 .) at /share/home/stu_chenhuiru/miniconda3/bin/calcDivergenceFromAlign.pl line 92. BEGIN failed--compilation aborted at /share/home/stu_chenhuiru/miniconda3/bin/calcDivergenceFromAlign.pl line 92.

oushujun commented 3 months ago

This seems to be the issue of Repeatmasker or the conda version of RepeatMasker. Please seek help on their sites because I have no idea. Thank you!

Shujun

wuyh0328 commented 3 months ago

Hey!Have you solved your problem? I had the same problem.