several issues in the ruuning of EDTA2

oushujun / EDTA

Extensive de-novo TE Annotator

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y

GNU General Public License v3.0

348 stars 73 forks source link

several issues in the ruuning of EDTA2 #466

Open yanyew opened 5 months ago

yanyew commented 5 months ago

Hello, thanks for your development of this useful tools! I met several issues when use EDTA2: 1) the file $genome.EDTA.TEanno.split.density didin't show the running result but the following content

but the command linepython $density_table -genome $genome -gff $genome.EDTA.TEanno.split.gff3 > $genome.EDTA.TEanno.split.density worked standalone rather than in the pipeline in EDTA.pl.

2) the file $genome.EDTA.TEanno.sum is empty while no any error message came out

oushujun commented 1 month ago

@yanyew Sorry for the long delay. It's been a while since you opened this issue, and EDTA has updated substantially. Please reinstall EDTA and try again. Thanks!

Shujun