When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly.

oushujun / EDTA

Extensive de-novo TE Annotator

https://genomebiology.biomedcentral.com/articles/10.1186/s13059-019-1905-y

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When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly. #487

Open dongaoqian opened 3 months ago

dongaoqian commented 3 months ago

Hello, I would like to ask why, when I run the PanEDTA script, it seems that the EDTA for each genome is being rerun instead of directly merging the EDTA results for each chromosome?

My command is as follows: panEDTA.sh -g PanEDTA_genome.list -c sample.cds.fna -t 20.

The output directory and the contents of genome.list are as follows:

20240723212004