Could LTR_retriever give the annotation of the components of TE?

oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/

GNU General Public License v3.0

188 stars 40 forks source link

Could LTR_retriever give the annotation of the components of TE? #108

Closed ttbond closed 2 years ago

ttbond commented 2 years ago

Such as the position of gag, reverse transcriptase and protease.

oushujun commented 2 years ago

Hello @ttbond, please use TE_sorter for this purpose. - Shujun