search

oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
176 stars 40 forks source link

RE: Masking LTR #144

Closed Malabady closed 1 year ago

Malabady commented 1 year ago

Hey I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one?

Best,

oushujun commented 1 year ago

Yes this is the correct file.

Shujun

On Tue, Jan 24, 2023 at 5:05 PM Malabady @.***> wrote:

Hey I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one?

Best,

— Reply to this email directly, view it on GitHub https://github.com/oushujun/LTR_retriever/issues/144, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNX4NCYOEGSHE3C2IMUFZTWUBGZ5ANCNFSM6AAAAAAUFTVZBE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

Malabady commented 1 year ago

Many thanks.

From: Shujun Ou @.> Date: Tuesday, January 24, 2023 at 10:40 PM To: oushujun/LTR_retriever @.> Cc: Magdy S Alabady @.>, Author @.> Subject: Re: [oushujun/LTR_retriever] RE: Masking LTR (Issue #144) [EXTERNAL SENDER - PROCEED CAUTIOUSLY] Yes this is the correct file.

Shujun

On Tue, Jan 24, 2023 at 5:05 PM Malabady @.***> wrote:

Hey I want to confirm that the LTR library (*.fa.LTRlib.fa) is the correct library file that I can use with RepeatMasker to mask the genome. If this is not the correct library file, what is the correct one?

Best,

— Reply to this email directly, view it on GitHub https://github.com/oushujun/LTR_retriever/issues/144, or unsubscribe https://github.com/notifications/unsubscribe-auth/ABNX4NCYOEGSHE3C2IMUFZTWUBGZ5ANCNFSM6AAAAAAUFTVZBE . You are receiving this because you are subscribed to this thread.Message ID: @.***>

— Reply to this email directly, view it on GitHubhttps://github.com/oushujun/LTR_retriever/issues/144#issuecomment-1403055378, or unsubscribehttps://github.com/notifications/unsubscribe-auth/ACHNEMA7ELLOSBPO5BWMG4LWUCODJANCNFSM6AAAAAAUFTVZBE. You are receiving this because you authored the thread.Message ID: @.***>