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oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
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I can´t install LTR_retriever via conda #152

Closed jplondono14 closed 1 year ago

jplondono14 commented 1 year ago

I have unsuccessfully tried to create a conda environment in order to download and use LTR_retriever. However this detailed error appears constantly. I just used this command:

conda create -n ltr_retriever source activate ltr_retriever conda install -c bioconda ltr_retriever

Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Solving environment: ...working... failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed with initial frozen solve. Retrying with flexible solve. Solving environment: ...working... ^MBuilding graph of deps: 0%| | 0/15 [00:00<?, ?it/s]^MExamining libgomp: 0%| | 0/$ Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. failed

UnsatisfiableError: The following specifications were found to be incompatible with a past explicit spec that is not an explicit spec in this operation (perl-text-soundex):

I really would appreciate some help

oushujun commented 1 year ago

Hello,

Sorry for the incovenience. I am currently updating the conda recipe to prepare for the v2.9.3 release, so the conda installation is still a bit funky. You may use the step-by-step annotation approach for the moment. Please let me know if this works or not.

Best, Shujun

oushujun commented 1 year ago

Hello,

The conda recipie has been updated. You should be able to install normally now. Please let me know if you encounter any issues. Thanks!

Shujun

jplondono14 commented 1 year ago

I am still having the same issue :(

oushujun commented 1 year ago

Hello,

You may try to specify the version by conda install -c bioconda ltr_retriever=2.9.4, otherwises you may clean up the cached packages and retry. You may also try on a different server and see if it's the issue of Os or the package recipe.

Shujun