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oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
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Are there any changes in Module 1 between versions 2.9.0 and 2.9.9? #161

Open ala98412 opened 5 months ago

ala98412 commented 5 months ago

Hi there,

I have 3757 total unique candidates.

After Module 1, 2727 clean candidates remained in ver2.9.0, and 3757 clean candidates remained in ver2.9.9.

I am wondering if there are any changes in Module 1.

Best regard, Jui-Hung

oushujun commented 3 months ago

I don't recall we have such dramatic changes. You may examine the code or the differences in annotations to find out further.

Shujun

oushujun commented 2 months ago

Hi Jui-Hung,

Any findings on the differences?

Shujun