script to generate the Figure 4 in the LAI paper

oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/

GNU General Public License v3.0

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script to generate the Figure 4 in the LAI paper #23

Closed xinshuaiqi closed 5 years ago

xinshuaiqi commented 5 years ago

Hi Shujun, Which package or library did you used to generate the plot on Figure 4 in the LAI paper? Do you mind to share an example of your script? Thank you.

oushujun commented 5 years ago

The method for Manhattan plots in Figure 4 was provided in the paper.

Manhattan plots were generated using the qqman package in R (https://github.com/stephenturner/qqman).

Please refer to @stephenturner for paticular questions for this method. Thanks.