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oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
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sequence ID length limit constraint #93

Closed anandksrao closed 3 years ago

anandksrao commented 3 years ago

In LTR_retriever, is it possible to suppress the sequence ID length limit constraint of 15 characters? If yes, then is it possible for end-user to do something simple like comment out a line in your code? Please advise. Thanks!

oushujun commented 3 years ago

The length limit is imposed by rmblast. So wherever rmblast is used, ie. RepeatMasker, blastn, blastx, there is a length limit on the sequence IDs.

On Fri, May 28, 2021 at 12:13 PM anandksrao @.***> wrote:

In LTR_retriever, is it possible to suppress the sequence ID length limit constraint of 15 characters? If yes, then is it possible for end-user to do something simple like comment out a line in your code? Please advise. Thanks!

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