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oushujun / LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5813529/
GNU General Public License v3.0
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How to judge the 5' and 3' LTR? #98

Closed liufuyan2016 closed 3 years ago

liufuyan2016 commented 3 years ago

How to judge 5' and 3' LTR according to the LTR retriever file? according to the strand?

oushujun commented 3 years ago

Yes. Left LTR Is 5' for the + strand, right LTR Is 5' for the - strand. Some LTR could not confirm strand due to the lack of coding info or confound strand info.

Shujun

On Mon, Jun 21, 2021 at 11:31 AM liufuyan2016 @.***> wrote:

How to judge 5' and 3' LTR according to the LTR retriever file? according to the strand?

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