outbreak-info / R-outbreak-info

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.
https://outbreak-info.github.io/R-outbreak-info/
MIT License
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README #47

Closed sabahzero closed 2 years ago

sabahzero commented 2 years ago
sabahzero commented 2 years ago

It looks like there's a few different vignettes in the 'docs' folder, but in the README only one is listed. I would be explicit in the README on what each of these do, and why you're focusing on the one you have hyperlinked in the README (or otherwise briefly describe them all)

sabahzero commented 2 years ago

Include notes about additionally installing the following libraries in R (RE Janet's comments)

library(outbreakinfo) library(ggplot2) library(dplyr)

sabahzero commented 2 years ago

Looking at the vignettes, they all seem good to me but I think it would be even better for the user if you could walk them through a specific case and have an example of how each argument is executed. I can set aside 3-4 hours to help with this over the weekend, if you want.

sabahzero commented 2 years ago

Have you considered integrating gganimate as part of these? It may be a bit late now, but could be especially good for time progressions. This definitely needs to be updated, but the 'R resources' section may also be helpful: https://sabahzero.github.io/dataviz/resources