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outbreak-info / outbreak.info

During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
https://outbreak.info/
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Situation Reports: Mutation codons #268

Open AlaaALatif opened 3 years ago

AlaaALatif commented 3 years ago

Given a user-specified set of mutation(s), what is the reference codon and alternative codon(s) for each mutation?

EmilyHaag commented 3 years ago

User suggestion: Perhaps add codon information for mutations. The goal would be to help illuminate the possible next mutations. For instance, arginine coded by CGG needs only one mutation to change to glutamine but two to histidine, but arginine coded by CGC needs only one mutations to change to histidine but two to glutamine.

AlaaALatif commented 3 years ago

Codon information should be available from bjorn's JSON output under field names ref_codon and alt_codon