Quick Test Circular View with Existing VCFs (with Translocations)

overture-stack / dms-jbrowse-components

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Closed b-f-chan closed 8 months ago

b-f-chan commented 1 year ago

Quickly test that circular view can be loaded in DMS with some existing VCFs with translocations

Resources provided by J-Browse and Bioinfo teams:

http://schatz-lab.org/publications/SKBR3/ (see Variants discovered with Sniffles: reads_lr_skbr3.fa_ngmlr-0.2.3_mapped.bam.sniffles1kb_auto_l8_s5_noalt.vcf.gz)
https://dcc.icgc.org/releases/PCAWG/consensus_sv (PCAWG public data)

Bioinfo to assist with loading files into Overture QA

samrichca commented 1 year ago

file uuid on qa is e6816386-efbc-5269-a845-9978fdd73ac5

samrichca commented 1 year ago

samrichca commented 1 year ago

b-f-chan commented 8 months ago

Test worked, closing