Need to add support for gencode coverage mapping --> This involves several sub-tasks which may become separate tickets later. @demariadaniel and @edsu7 to decide details later.
High-Level Sub-Tasks:
[ ] Add functionality to map gencode names and regions (coordinates) to read coverage values in the BAM file
[ ] Determine and add list of priority genes to use in the mapping (we are NOT going to use all 63K+ of genes possible)
[ ] Add functionality to translate the mapping into an Analysis Object in SONG (this likely needs to be its own ticket later) (basically logic to submit into SONG)
Need to add support for gencode coverage mapping --> This involves several sub-tasks which may become separate tickets later. @demariadaniel and @edsu7 to decide details later.
High-Level Sub-Tasks: