Issue When Building

[Avillanueva15]

This could be that i'm just an idiot, and i missed something in the setup. When I press build, and/or run i get an error within qopengl.h that reads GL/gl.h: No such file or directory.

The code within qopengl.h (what's throwing the error) reads:

http://prntscr.com/ebqdii (screenshot of the code)

I'm not sure what i'm missing, but if i could have some sort of guidance that would be wonderful.

This is in an Oracle VM VirtualBox running Ubuntu 16.04.

[andeplane]

Hi,

this is because you have not installed OpenGL libraries. We should update the readme so this is mentioned. On Ubuntu 16.04, you can install this by running sudo apt install libgl1-mesa-dev You can read more about the package here.

Isn't that right @dragly?

[Avillanueva15]

That resolved this issue, but i'm still having one additional issue now.

http://prntscr.com/ebqij1

Thank you for a very fast response!

[andeplane]

Did you run the configuration script python configure.py ?

[Avillanueva15]

Yes. With that said that's not the only thing i'm missing.

http://prntscr.com/ebqkm8

[andeplane]

For me it seems like your lammps.pri isn't correct / not existing. Can you confirm that you have a lammps.pri in your atomify-lammps-folder? If yes, post the contents of the file. If no, could you rerun python configure.py?

[Avillanueva15]

Yes, I do have this file. I should also add that i re-ran configure.py when you mentioned it, just to see if this fixed the issue. http://prntscr.com/ebqmos

[andeplane]

Hmm ok, so you probably have the files. Can you see the lammps.pri in your list of files inside Qt Creator? It could be that it is somehow not included. Does it look something like this? In the list of the files (left), I have the lammps.pri

[Avillanueva15]

Yes this does show up in the list view. http://prntscr.com/ebqqz7

[andeplane]

Ok, could you try to delete the build folder? You can see the directory by clicking the Projects button in the left gray menu. Maybe add me on Skype, so we can fix this quicker than chatting here in the Issues (search for Anders Hafreager, pick the profile with a picture).

[andeplane]

And then rebuild after deleting it. The next step would be to go to Compile Output (in the bottom of Qt Creator) and copy-paste the output from there (you can clear the window first by clicking the button highlighted in this screenshot, middle of the screen, right next to Compile Output, then rebuild):

[andeplane]

Can you also confirm that the directories in lammps.pri exist?

[Avillanueva15]

I do not have Skype installed at the moment, but I did do what you said. There was no build path, so i defined a build path within the /home/ directory and started rebuilding. This is the result of building: http://prntscr.com/ebr2k1

And yes, the directories defined inlammps.prido exist

[andeplane]

Ok. I need more than what I can see here. Can you copy-paste the text in here?

[Avillanueva15]

Incoming Wall of Text 16:48:51: Running steps for project atomify-lammps... 16:48:51: Starting: "/home/adam/Qt/5.8/gcc_64/bin/qmake" /home/adam/atomify-lammps/atomify-lammps.pro -spec linux-g++ CONFIG+=debug CONFIG+=qml_debug Info: creating stash file /home/adam/atomify-lammps/lammps-build/.qmake.stash 16:48:51: The process "/home/adam/Qt/5.8/gcc_64/bin/qmake" exited normally. 16:48:51: Starting: "/usr/bin/make" qmake_all cd atomify-lammps/ && /home/adam/Qt/5.8/gcc_64/bin/qmake -o Makefile /home/adam/atomify-lammps/atomify-lammps/atomify-lammps.pro -spec linux-g++ CONFIG+=debug CONFIG+=qml_debug Project MESSAGE: This project is using private headers and will therefore be tied to this specific Qt module build version. Project MESSAGE: Running this project against other versions of the Qt modules may crash at any arbitrary point. Project MESSAGE: This is not a bug, but a result of using Qt internals. You have been warned! cd atomify-lammps/ && /usr/bin/make -f Makefile qmake_all make[1]: Entering directory '/home/adam/atomify-lammps/lammps-build/atomify-lammps' make[1]: Nothing to be done for 'qmake_all'. make[1]: Leaving directory '/home/adam/atomify-lammps/lammps-build/atomify-lammps' 16:48:52: The process "/usr/bin/make" exited normally. 16:48:52: Starting: "/usr/bin/make" cd atomify-lammps/ && ( test -e Makefile || /home/adam/Qt/5.8/gcc_64/bin/qmake -o Makefile /home/adam/atomify-lammps/atomify-lammps/atomify-lammps.pro -spec linux-g++ CONFIG+=debug CONFIG+=qml_debug ) && /usr/bin/make -f Makefile make[1]: Entering directory '/home/adam/atomify-lammps/lammps-build/atomify-lammps' g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderbuilder.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderbuilder.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderbuilderbinding.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderbuilderbinding.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shadernode.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shadernode.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderoutput.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderoutput.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderutils.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderutils.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shadernodesplugin.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shadernodesplugin.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderbuildermaterialbinding.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderbuildermaterialbinding.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderparameter.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderparameter.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o shaderuniformvalue.o /home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src/shaderuniformvalue.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o simulator.o /home/adam/atomify-lammps/libs/SimVis/src/core/simulator.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o simvisplugin.o /home/adam/atomify-lammps/libs/SimVis/src/core/simvisplugin.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o pointgeometry.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/pointgeometry.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o spherespointgeometry.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/spherespointgeometry.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o spheredata.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/spheredata.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o cylinderdata.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/cylinderdata.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o uniformgridgeometry.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/uniformgridgeometry.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o marchingcubestabletexture.o /home/adam/atomify-lammps/libs/SimVis/src/utils/marchingcubestabletexture.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o bonddata.o /home/adam/atomify-lammps/libs/SimVis/src/render/geometry/bonddata.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o qmlpreviewer.o /home/adam/atomify-lammps/libs/QmlPreviewer/qmlpreviewer.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o main.o /home/adam/atomify-lammps/atomify-lammps/main.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o mysimulator.o /home/adam/atomify-lammps/atomify-lammps/mysimulator.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o lammpscontroller.o /home/adam/atomify-lammps/atomify-lammps/lammpscontroller.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o highlighter.o /home/adam/atomify-lammps/atomify-lammps/highlighter.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o datasource.o /home/adam/atomify-lammps/atomify-lammps/datasource.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o nvt.o /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/nvt.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o simulatorcontrol.o /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/simulatorcontrol.cpp g++ -c -pipe -fopenmp -g -std=gnu++11 -w -D_REENTRANT -fPIC -DLAMMPS_GZIP -DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64 -DQT_QML_DEBUG -DQT_3DQUICK_LIB -DQT_QUICK_LIB -DQT_OPENGL_LIB -DQT_SVG_LIB -DQT_CHARTS_LIB -DQT_WIDGETS_LIB -DQT_OPENGLEXTENSIONS_LIB -DQT_DATAVISUALIZATION_LIB -DQT_3DRENDER_LIB -DQT_3DINPUT_LIB -DQT_3DLOGIC_LIB -DQT_3DCORE_LIB -DQT_GAMEPAD_LIB -DQT_GUI_LIB -DQT_QML_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -I/home/adam/atomify-lammps/atomify-lammps -I. -I/home/adam/atomify-lammps/libs/lammps/src -I/home/adam/atomify-lammps/libs/lammps/src/STUBS -I/home/adam/atomify-lammps/libs/SimVis/package_vendor -I/home/adam/atomify-lammps/libs/SimVis/libs/ShaderNodes/src -I/home/adam/atomify-lammps/libs/SimVis/src -I/home/adam/atomify-lammps/libs/QmlPreviewer -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick/5.8.0/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include -I/home/adam/Qt/5.8/gcc_64/include/Qt3DQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQuick/5.8.0/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtQuick -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGL -I/home/adam/Qt/5.8/gcc_64/include/QtSvg -I/home/adam/Qt/5.8/gcc_64/include/QtCharts -I/home/adam/Qt/5.8/gcc_64/include/QtWidgets -I/home/adam/Qt/5.8/gcc_64/include/QtOpenGLExtensions -I/home/adam/Qt/5.8/gcc_64/include/QtDataVisualization -I/home/adam/Qt/5.8/gcc_64/include/Qt3DRender -I/home/adam/Qt/5.8/gcc_64/include/Qt3DInput -I/home/adam/Qt/5.8/gcc_64/include/Qt3DLogic -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore/5.8.0/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/Qt3DCore -I/home/adam/Qt/5.8/gcc_64/include/QtGamepad -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtGui/5.8.0/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtGui -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtQml/5.8.0/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtQml -I/home/adam/Qt/5.8/gcc_64/include/QtNetwork -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0 -I/home/adam/Qt/5.8/gcc_64/include/QtCore/5.8.0/QtCore -I/home/adam/Qt/5.8/gcc_64/include/QtCore -I. -isystem /usr/include/libdrm -I/home/adam/Qt/5.8/gcc_64/mkspecs/linux-g++ -o cpfix.o /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp: In member function ‘bool CPFix::copyData(LAMMPS_NS::FixAveChunk*, LAMMPSController*)’: /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp:31:43: error: ‘class LAMMPS_NS::ComputeChunkAtom’ has no member named ‘extract’ int *which = static_cast<int*>(chunk->extract("which", dimension)); ^ /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp:32:41: error: ‘class LAMMPS_NS::ComputeChunkAtom’ has no member named ‘extract’ int *dim = static_cast<int*>(chunk->extract("dim", dimension)); ^ /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp:33:45: error: ‘class LAMMPS_NS::ComputeChunkAtom’ has no member named ‘extract’ int *nlayers = static_cast<int*>(chunk->extract("nlayers", dimension)); ^ In file included from /home/adam/atomify-lammps/libs/lammps/src/style_fix.h:8:0, from /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.h:4, from /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp:1: /home/adam/atomify-lammps/libs/lammps/src/fix_ave_chunk.h:74:10: error: ‘LAMMPS_NS::bigint LAMMPS_NS::FixAveChunk::nextvalid()’ is private bigint nextvalid(); ^ /home/adam/atomify-lammps/atomify-lammps/LammpsWrappers/simulatorcontrols/cpfix.cpp:52:27: error: within this context if(fix->nextvalid() == lammpsController->system->currentTimestep()+1) { ^ Makefile:19471: recipe for target 'cpfix.o' failed make[1]: *** [cpfix.o] Error 1 make[1]: Leaving directory '/home/adam/atomify-lammps/lammps-build/atomify-lammps' Makefile:42: recipe for target 'sub-atomify-lammps-make_first-ordered' failed make: *** [sub-atomify-lammps-make_first-ordered] Error 2 16:50:21: The process "/usr/bin/make" exited with code 2. Error while building/deploying project atomify-lammps (kit: Desktop Qt 5.8.0 GCC 64bit) When executing step "Make" 16:50:21: Elapsed time: 01:31.

http://pastebin.com/uTaFG70Y (pastbin as well)

[andeplane]

It seems like Qt Creator whines about the files, but the building is ok. The error you show me here is another problem where it seems the LAMMPS patching has not yet happened.

One thing you could try is to delete everything and clone atomify again. Then run the python configure.py. It would also help if you could paste everything the console prints while running the configuration script.

[Avillanueva15]

Okay, i'm doing this now and i'll paste the console readout after i run configuration script. Thank you so much!

[andeplane]

Since the compilation commands contains -I/home/adam/atomify-lammps/libs/lammps/src it seems like the lammps.pri is working as it should. So we don't need to worry about Qt Creator not finding the files (yet at least).

The problem is that parts of the configuration did not happen, so it will probably tell us what happened in the output.

Thanks for being patient and helping us with this too :D

[Avillanueva15]

I will post this as a pastebin since it is REALLY long. Anyways, here it is:

http://pastebin.com/yNC6EwtM

[andeplane]

And the building is still failing I assume?

I'm doing the same here now to see if I have the same problem. I might have broken things without noticing it be cause i don't do the patching every time :)

[Avillanueva15]

It's building at the moment, so i'll post back when something happens :D

[andeplane]

Ok :)

Awesome! Can you confirm that atomify-lammps/libs/lammps/src/compute_chunk_atom.cpp, on line 1994 looks like this:

void *ComputeChunkAtom::extract(const char *str, int &dimension) {
  dimension = 1;
  if (strcmp(str,"which") == 0) return (void *) &which;
  dimension = 3;
  if (strcmp(str,"dim") == 0) return (void *) dim;
  if (strcmp(str,"nlayers") == 0) return (void *) nlayers;
  return NULL;
}

In the compilation error you sent previosly, it said that this function does not exist. It is parts of the patching we do, so if it does, things look good this time!

[andeplane]

A small warning though, if it works, the performance might not be best in a VM. You should consider doing dual boot :) At some point we will also focus on the Windows build.

[Avillanueva15]

Yeah, I am only using a VM in order to see if i can actually set this and another piece of software up (VASP) as well as to actually learn how to use LAMMPS since a professor at my school is not being very helpful (the GUI interface would help tons).

This time it spit out a file truncation error, but i may just do a dual boot system now that i've had this trouble and see if i can get it working. Not to mention that the VM locked up once or twice while building.

[andeplane]

Yeah I see :) I've had no problems on native installations of Ubuntu so far. I really hope you'll enjoy this tool to learn LAMMPS :) Where did you hear about Atomify?

[Avillanueva15]

Dumb luck, i typed in "LAMMPS" into the Ubuntu software directory (I am forgetting what it's called) and saw it there. Then i googled it and found this site! I also installed it on my android phone.

[andeplane]

Ok nice :) If you have any questions, let me know.