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owid / etl

A compute graph for loading and transforming OWID's data
https://docs.owid.io/projects/etl
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📊 antimicrobial resistance: adding share of countries reporting data #3586

Closed spoonerf closed 4 days ago

owidbot commented 4 days ago
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Login: ssh owid@staging-site-amr-share-countries

chart-diff: ✅
  • 3/3 reviewed charts
  • Modified: 0/0
  • New: 3/3
  • Rejected: 0
data-diff: ❌ Found differences ```diff ~ Dataset garden/antibiotics/2024-11-15/testing_coverage - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ + + Table specimen + + Column total_bcis_with_ast + + Column infections_not_tested_for_susceptibility ~ Table testing_coverage (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ ~ Column ctas_with_reported_bcis_bloodstream (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Bloodstream infections ~ Column ctas_with_reported_bcis_gonorrhea (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gonorrhea infections ~ Column ctas_with_reported_bcis_stool (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gastrointestinal infections + + Column ctas_with_reported_bcis_urinary_tract - - Column ctas_with_reported_bcis_urine ~ Column ctas_with_reported_bcis_with_ast__gt__80_bcis_bloodstream (changed metadata) - - title: Number of countries testing >80% of confirmed bloodstrean infections for antibiotic susceptibility ? ^ + + title: Number of countries testing >80% of confirmed bloodstream infections for antibiotic susceptibility ? ^ - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Bloodstream infections ~ Column ctas_with_reported_bcis_with_ast__gt__80_bcis_gonorrhea (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gonorrhea infections ~ Column ctas_with_reported_bcis_with_ast__gt__80_bcis_stool (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gastrointestinal infections + + Column ctas_with_reported_bcis_with_ast__gt__80_bcis_urinary_tract - - Column ctas_with_reported_bcis_with_ast__gt__80_bcis_urine + + Column share_ctas_with_reported_bcis_bloodstream + + Column share_ctas_with_reported_bcis_gonorrhea + + Column share_ctas_with_reported_bcis_stool + + Column share_ctas_with_reported_bcis_urinary_tract + + Column share_ctas_with_reported_bcis_with_ast__gt__80_bcis_bloodstream + + Column share_ctas_with_reported_bcis_with_ast__gt__80_bcis_gonorrhea + + Column share_ctas_with_reported_bcis_with_ast__gt__80_bcis_stool + + Column share_ctas_with_reported_bcis_with_ast__gt__80_bcis_urinary_tract ~ Column total_bcis_bloodstream (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Bloodstream infections ~ Column total_bcis_gonorrhea (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gonorrhea infections ~ Column total_bcis_stool (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gastrointestinal infections + + Column total_bcis_urinary_tract - - Column total_bcis_urine ~ Column total_bcis_with_ast_bloodstream (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Bloodstream infections ~ Column total_bcis_with_ast_gonorrhea (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gonorrhea infections ~ Column total_bcis_with_ast_stool (changed metadata) - - title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - testing coverage ? ^ ^ + + title: Global Antimicrobial Resistance and Use Surveillance System (GLASS) - Testing Coverage ? ^ ^ - - citation_full: Global AMR data - Global Antimicrobial Resitsance and Use Surveillance System (GLASS), World Health Organization ? - + + citation_full: Global AMR data - Global Antimicrobial Resistance and Use Surveillance System (GLASS), World Health Organization ? + + + display: + + name: Gastrointestinal infections + + Column total_bcis_with_ast_urinary_tract - - Column total_bcis_with_ast_urine = Dataset garden/aviation_safety_network/2024-06-05/aviation_statistics = Table aviation_statistics = Dataset garden/education/2023-07-17/education_barro_lee_projections = Table education_barro_lee_projections = Dataset garden/education/2023-07-17/education_lee_lee = Table education_lee_lee = Dataset garden/emdat/2024-04-11/natural_disasters = Table natural_disasters_decadal_impact = Table natural_disasters_yearly_deaths = Table natural_disasters_decadal = Table natural_disasters_yearly = Table natural_disasters_yearly_impact = Table natural_disasters_decadal_deaths = Dataset garden/emissions/2024-06-20/gdp_and_co2_decoupling - - Table gdp_and_co2_decoupling - - Column consumption_emissions_per_capita_change - - Column gdp_per_capita_change = Dataset garden/emissions/2024-11-13/gdp_and_co2_decoupling - - Table gdp_and_co2_decoupling - - Column consumption_emissions_per_capita_change - - Column gdp_per_capita_change = Dataset garden/growth/2024-05-16/gdp_historical = Table gdp_historical = Dataset garden/health/2024-04-22/gpei_funding = Table gpei_funding = Dataset garden/oecd/2024-08-21/co2_air_transport = Table co2_air_transport = Dataset garden/research_development/2024-05-20/patents_articles = Table patents_articles = Dataset garden/sipri/2024-07-08/military_expenditure = Table military_expenditure = Dataset garden/tourism/2024-08-17/unwto = Table unwto = Dataset garden/wb/2024-09-09/food_prices_for_nutrition = Table food_prices_for_nutrition = Dataset garden/worldbank_wdi/2024-05-20/wdi = Table wdi Legend: +New ~Modified -Removed =Identical Details Hint: Run this locally with etl diff REMOTE data/ --include yourdataset --verbose --snippet ``` Automatically updated datasets matching _weekly_wildfires|excess_mortality|covid|fluid|flunet|country_profile|garden/ihme_gbd/2019/gbd_risk_ are not included

Edited: 2024-11-21 16:30:09 UTC Execution time: 4.71 seconds