Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀
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TCGA_BRCA/OV Coordinates for Feature extraction #24
I am trying to extract features from TCGA_BRCA and TCGA_OV slides using the coordinates. But, in your google drive only a few (107 for TCGA_OV_224, 1000 for TCGA_BRCA_224) coordinates of slides are available. How can I get the coordinates of all the slides or TCGA_OV and TCGA_BRCA? Is there any code to produce these coordinates from the slides?
wyh196646
commented
3 weeks ago
I am trying to extract features from TCGA_BRCA and TCGA_OV slides using the coordinates. But, in your google drive only a few (107 for TCGA_OV_224, 1000 for TCGA_BRCA_224) coordinates of slides are available. How can I get the coordinates of all the slides or TCGA_OV and TCGA_BRCA? Is there any code to produce these coordinates from the slides?