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owkin / PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
https://pydeseq2.readthedocs.io/en/latest/
MIT License
573 stars 60 forks source link

Replace np.NaN with np.nan -> numpy 2.0 compat #282

Closed Zethson closed 3 months ago

Zethson commented 3 months ago

What does your PR implement? Be specific.

Our pre-release complains about:

E AttributeError: np.NaN was removed in the NumPy 2.0 release. Use np.nan instead.

abearab commented 2 months ago

@BorisMuzellec I have v0.4.9 installed but I still face this issue. Is it still pending to be released as a new version?

valentinadiproietto commented 1 month ago

@BorisMuzellec, same for me, I have I have v0.4.9 installed but I still face this issue, but @abearab v0.4.10 solves the issue.