search

owkin / PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
https://pydeseq2.readthedocs.io/en/latest/
MIT License
570 stars 60 forks source link

Download TCGA data #53

Closed alberto-mora closed 1 year ago

alberto-mora commented 1 year ago

I am trying to download the TCGA data to follow the PyDESeq2 step-by-step pipeline but I can't find the files TCGA-PAAD_clinical.tsv.gz and TCGA-PAAD_raw_RNAseq.tsv.gz in https://portal.gdc.cancer.gov/. Do they go by another name? Thank you

BorisMuzellec commented 1 year ago

Closing - support for TCGA data download is beyond the scope of this repo.