This pull request contains codes that cover the issue, i.e. GAF inference were incomplete due to incorrect mapping for part_of. To solve this issue,
In createPropagationRules of BasicAnnotationPropagator, I added codes that make sure the mappings in propagationRules are correct, i.e., additionally check whether properties for part_of or occurs_in come from BFO.
I also extended getIRIByIdentifier of OWLGraphWrapperExtended to give priorities to properties from BFO/RO if multiple candidate properties are found for given ids. I also added the test case for this extended function, OWLGraphWrapperExtendedTest. Thank you.
This pull request contains codes that cover the issue, i.e. GAF inference were incomplete due to incorrect mapping for
part_of. To solve this issue,createPropagationRulesofBasicAnnotationPropagator, I added codes that make sure the mappings inpropagationRulesare correct, i.e., additionally check whether properties forpart_oforoccurs_income from BFO.getIRIByIdentifierofOWLGraphWrapperExtendedto give priorities to properties from BFO/RO if multiple candidate properties are found for given ids. I also added the test case for this extended function,OWLGraphWrapperExtendedTest. Thank you.